Pipeline Overview

TNT_pipeline_2.core_workflows.main_workflow(statslabels, bet_frac, bet_vertical_gradient, inormalize_const2, inormalize_range, subcortical=False, subcort_statslabels=None, icv=False, debug=False, max_shear_angle=1e-06, num_threads=1)
_images/pipeline-1.png

(Source code, png, svg, pdf)

TNT_pipeline_2.core_workflows.preproc_workflow(bet_frac, bet_vertical_gradient, inormalize_const2, inormalize_range, max_shear_angle)
_images/pipeline-2.png

(Source code, png, svg, pdf)

TNT_pipeline_2.core_workflows.ants_workflow(debug=False, num_threads=1)
_images/pipeline-3.png

(Source code, png, svg, pdf)

TNT_pipeline_2.core_workflows.classify_workflow(max_shear_angle)
_images/pipeline-4.png

(Source code, png, svg, pdf)

TNT_pipeline_2.core_workflows.segment_lobes_workflow(num_threads=1)
_images/pipeline-5.png

(Source code, png, svg, pdf)

TNT_pipeline_2.core_workflows.subcortical_workflow(debug=False, num_threads=1)
_images/pipeline-6.png

(Source code, png, svg, pdf)

TNT_pipeline_2.core_workflows.icv_workflow(num_threads=1)
_images/pipeline-7.png

(Source code, png, svg, pdf)

TNT_pipeline_2.core_workflows.tomnc_workflow(wfname)
_images/pipeline-8.png

(Source code, png, svg, pdf)

TNT_pipeline_2.core_workflows.toniigz_workflow(wfname, max_shear_angle, **kwargs)
_images/pipeline-9.png

(Source code, png, svg, pdf)

TNT_pipeline_2.core_workflows.forceqform_workflow(files, max_shear_angle)
_images/pipeline-10.png

(Source code, png, svg, pdf)